Staff View: Metagenomic data of bacterial community from different land uses at the river basin, Kelantan

Metagenomic data of bacterial community from different land uses at the river basin, Kelantan

The data provided in the article includes the sequence of bacterial 16S rRNA gene from a high conservation value forest, logged forest, rubber plantation and oil palm plantation collected at Kelantan river basin. The logged forest area was previously notified as a flooding region. The total gDNA of...

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Main Authors:	Rupert, Rennielyn, Lie, Grace Joy Chin Wei, John, Daisy Vanitha, Annammala, Kogila Vani, Jani, Jaeyres, Rodrigues, Kenneth Francis
Format:	Article
Language:	English
Published:	Elsevier Inc. 2020
Subjects:	GE Environmental Sciences TD Environmental technology. Sanitary engineering
Online Access:	http://eprints.utm.my/id/eprint/91712/1/KogilaVaniAnnammala2020_MetagenomicDataofBacterialCommunity.pdf http://eprints.utm.my/id/eprint/91712/ http://dx.doi.org/10.1016/j.dib.2020.106351
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spelling	my.utm.917122021-07-27T05:46:19Z http://eprints.utm.my/id/eprint/91712/ Metagenomic data of bacterial community from different land uses at the river basin, Kelantan Rupert, Rennielyn Lie, Grace Joy Chin Wei John, Daisy Vanitha Annammala, Kogila Vani Jani, Jaeyres Rodrigues, Kenneth Francis GE Environmental Sciences TD Environmental technology. Sanitary engineering The data provided in the article includes the sequence of bacterial 16S rRNA gene from a high conservation value forest, logged forest, rubber plantation and oil palm plantation collected at Kelantan river basin. The logged forest area was previously notified as a flooding region. The total gDNA of bacterial community was amplified via polymerase chain reaction at V3-V4 regions using a pair of specific universal primer. Amplicons were sequenced on Illumina HiSeq paired-end platform to generate 250 bp paired-end raw reads. Several bioinformatics tools such as FLASH, QIIME and UPARSE were used to process the reads generated for OTU analysis. Meanwhile, R&D software was used to construct the taxonomy tree for all samples. Raw data files are available at the Sequence Read Archive (SRA), NCBI and data information can be found at the BioProject and BioSample, NCBI. The data shows the comparison of bacterial community between the natural forest and different land uses. Elsevier Inc. 2020-12 Article PeerReviewed application/pdf en http://eprints.utm.my/id/eprint/91712/1/KogilaVaniAnnammala2020_MetagenomicDataofBacterialCommunity.pdf Rupert, Rennielyn and Lie, Grace Joy Chin Wei and John, Daisy Vanitha and Annammala, Kogila Vani and Jani, Jaeyres and Rodrigues, Kenneth Francis (2020) Metagenomic data of bacterial community from different land uses at the river basin, Kelantan. Data in Brief, 33 . pp. 1-6. ISSN 2352-3409 http://dx.doi.org/10.1016/j.dib.2020.106351 DOI:10.1016/j.dib.2020.106351
institution	Universiti Teknologi Malaysia
building	UTM Library
collection	Institutional Repository
continent	Asia
country	Malaysia
content_provider	Universiti Teknologi Malaysia
content_source	UTM Institutional Repository
url_provider	http://eprints.utm.my/
language	English
topic	GE Environmental Sciences TD Environmental technology. Sanitary engineering
spellingShingle	GE Environmental Sciences TD Environmental technology. Sanitary engineering Rupert, Rennielyn Lie, Grace Joy Chin Wei John, Daisy Vanitha Annammala, Kogila Vani Jani, Jaeyres Rodrigues, Kenneth Francis Metagenomic data of bacterial community from different land uses at the river basin, Kelantan
description	The data provided in the article includes the sequence of bacterial 16S rRNA gene from a high conservation value forest, logged forest, rubber plantation and oil palm plantation collected at Kelantan river basin. The logged forest area was previously notified as a flooding region. The total gDNA of bacterial community was amplified via polymerase chain reaction at V3-V4 regions using a pair of specific universal primer. Amplicons were sequenced on Illumina HiSeq paired-end platform to generate 250 bp paired-end raw reads. Several bioinformatics tools such as FLASH, QIIME and UPARSE were used to process the reads generated for OTU analysis. Meanwhile, R&D software was used to construct the taxonomy tree for all samples. Raw data files are available at the Sequence Read Archive (SRA), NCBI and data information can be found at the BioProject and BioSample, NCBI. The data shows the comparison of bacterial community between the natural forest and different land uses.
format	Article
author	Rupert, Rennielyn Lie, Grace Joy Chin Wei John, Daisy Vanitha Annammala, Kogila Vani Jani, Jaeyres Rodrigues, Kenneth Francis
author_facet	Rupert, Rennielyn Lie, Grace Joy Chin Wei John, Daisy Vanitha Annammala, Kogila Vani Jani, Jaeyres Rodrigues, Kenneth Francis
author_sort	Rupert, Rennielyn
title	Metagenomic data of bacterial community from different land uses at the river basin, Kelantan
title_short	Metagenomic data of bacterial community from different land uses at the river basin, Kelantan
title_full	Metagenomic data of bacterial community from different land uses at the river basin, Kelantan
title_fullStr	Metagenomic data of bacterial community from different land uses at the river basin, Kelantan
title_full_unstemmed	Metagenomic data of bacterial community from different land uses at the river basin, Kelantan
title_sort	metagenomic data of bacterial community from different land uses at the river basin, kelantan
publisher	Elsevier Inc.
publishDate	2020
url	http://eprints.utm.my/id/eprint/91712/1/KogilaVaniAnnammala2020_MetagenomicDataofBacterialCommunity.pdf http://eprints.utm.my/id/eprint/91712/ http://dx.doi.org/10.1016/j.dib.2020.106351
_version_	1706956983572103168
score	13.211869

Metagenomic data of bacterial community from different land uses at the river basin, Kelantan

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