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Genetic assessment of the internal transcribed spacer region (its1.2) in mangifera indica l. Landraces.

Mango (Mangifera indica) is one of the most important tropical fruits in the world. Twenty-two genotypes of native mangoes from different regions of southern Iran (Hormozgan and Kerman) were collected and analyzed for the ribosomal genes. GC content was found to be 55.5%. Fu and Li's D* test st...

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Main Authors: Fazeli-Nasab, B., Sayyed, R. Z., Farsi, M., Ansari, S., El-Enshasy, H. A.
Format: Article
Published: Springer 2020
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TP Chemical technology
Online Access:http://eprints.utm.my/id/eprint/86883/
https://dx.doi.org/10.1007/s12298-019-00732-x
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spelling my.utm.868832020-10-22T04:10:26Z http://eprints.utm.my/id/eprint/86883/ Genetic assessment of the internal transcribed spacer region (its1.2) in mangifera indica l. Landraces. Fazeli-Nasab, B. Sayyed, R. Z. Farsi, M. Ansari, S. El-Enshasy, H. A. TP Chemical technology Mango (Mangifera indica) is one of the most important tropical fruits in the world. Twenty-two genotypes of native mangoes from different regions of southern Iran (Hormozgan and Kerman) were collected and analyzed for the ribosomal genes. GC content was found to be 55.5%. Fu and Li's D* test statistic (0.437), Fu and Li's F* test statistic (0.500) and Tajima's D (1.801) were positive and nonsignificant. A total of 769 positions were identified (319 with insertion or deletion including 250 polymorphic and 69 monomorphic loci; 450 loci without any insertion or deletion including 35 Singletons and 22 haplotypes). Nucleotide diversity of 0.309 and a high genetic differentiation including Chi square of 79.8; P value of 0.3605 and df value of 76 was observed among mango genotypes studied. The numerical value of the ratio dN/dS (0.45) indicated a pure selection in the examined gene and the absence of any key changes. Cluster analysis differentiated the mango used in this research (M. indica L.) into two genotypes but could not differentiate their geographical locations. The results of this study indicated that a high genetic distance exists between HajiGholam (Manojan) and Arbabi (Rodan) genotypes and showed higher genetic diversity in mango of Rodan region. Results of present study suggested that for successful breeding, the genotypes of Rodan region mango especially Arbabi mango can be used as a gene donor and ITS can be a suitable tool for genetic evaluations of inter and intra species. Springer 2020 Article PeerReviewed Fazeli-Nasab, B. and Sayyed, R. Z. and Farsi, M. and Ansari, S. and El-Enshasy, H. A. (2020) Genetic assessment of the internal transcribed spacer region (its1.2) in mangifera indica l. Landraces. Physiology and Molecular Biology Of Plants, 26 (1). pp. 107-117. https://dx.doi.org/10.1007/s12298-019-00732-x DOI:10.1007/s12298-019-00732-x
institution Universiti Teknologi Malaysia
building UTM Library
collection Institutional Repository
continent Asia
country Malaysia
content_provider Universiti Teknologi Malaysia
content_source UTM Institutional Repository
url_provider http://eprints.utm.my/
topic TP Chemical technology
spellingShingle TP Chemical technology
Fazeli-Nasab, B.
Sayyed, R. Z.
Farsi, M.
Ansari, S.
El-Enshasy, H. A.
Genetic assessment of the internal transcribed spacer region (its1.2) in mangifera indica l. Landraces.
description Mango (Mangifera indica) is one of the most important tropical fruits in the world. Twenty-two genotypes of native mangoes from different regions of southern Iran (Hormozgan and Kerman) were collected and analyzed for the ribosomal genes. GC content was found to be 55.5%. Fu and Li's D* test statistic (0.437), Fu and Li's F* test statistic (0.500) and Tajima's D (1.801) were positive and nonsignificant. A total of 769 positions were identified (319 with insertion or deletion including 250 polymorphic and 69 monomorphic loci; 450 loci without any insertion or deletion including 35 Singletons and 22 haplotypes). Nucleotide diversity of 0.309 and a high genetic differentiation including Chi square of 79.8; P value of 0.3605 and df value of 76 was observed among mango genotypes studied. The numerical value of the ratio dN/dS (0.45) indicated a pure selection in the examined gene and the absence of any key changes. Cluster analysis differentiated the mango used in this research (M. indica L.) into two genotypes but could not differentiate their geographical locations. The results of this study indicated that a high genetic distance exists between HajiGholam (Manojan) and Arbabi (Rodan) genotypes and showed higher genetic diversity in mango of Rodan region. Results of present study suggested that for successful breeding, the genotypes of Rodan region mango especially Arbabi mango can be used as a gene donor and ITS can be a suitable tool for genetic evaluations of inter and intra species.
format Article
author Fazeli-Nasab, B.
Sayyed, R. Z.
Farsi, M.
Ansari, S.
El-Enshasy, H. A.
author_facet Fazeli-Nasab, B.
Sayyed, R. Z.
Farsi, M.
Ansari, S.
El-Enshasy, H. A.
author_sort Fazeli-Nasab, B.
title Genetic assessment of the internal transcribed spacer region (its1.2) in mangifera indica l. Landraces.
title_short Genetic assessment of the internal transcribed spacer region (its1.2) in mangifera indica l. Landraces.
title_full Genetic assessment of the internal transcribed spacer region (its1.2) in mangifera indica l. Landraces.
title_fullStr Genetic assessment of the internal transcribed spacer region (its1.2) in mangifera indica l. Landraces.
title_full_unstemmed Genetic assessment of the internal transcribed spacer region (its1.2) in mangifera indica l. Landraces.
title_sort genetic assessment of the internal transcribed spacer region (its1.2) in mangifera indica l. landraces.
publisher Springer
publishDate 2020
url http://eprints.utm.my/id/eprint/86883/
https://dx.doi.org/10.1007/s12298-019-00732-x
_version_ 1681489487401582592
score 13.211869

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