Cover Image

UTMGO : a tool for searching a group of semantically related gene ontology terms and application to annotation of anonymous protein sequence

Gene Ontology terms have been actively used to annotate various protein sets. SWISS-PROT, TrEMBL, and InterPro are protein databases that are annotated according to the Gene Ontology terms. However, direct implementation of the Gene Ontology terms for annotation of anonymous protein sequences is not...

Full description

Saved in:
Bibliographic Details
Main Authors: Deris, Safaai, Alashwal, H., Othman, M. R.
Format: Article
Language:English
Published: World Academy of Science, Engineering and Technology 2006
Subjects:
QA75 Electronic computers. Computer science
Online Access:http://eprints.utm.my/id/eprint/8452/1/8452.pdf
http://eprints.utm.my/id/eprint/8452/
http://www.waset.org/ijbms/v1.html
Tags: Add Tag
No Tags, Be the first to tag this record!
id my.utm.8452
record_format eprints
spelling my.utm.84522010-06-02T01:55:19Z http://eprints.utm.my/id/eprint/8452/ UTMGO : a tool for searching a group of semantically related gene ontology terms and application to annotation of anonymous protein sequence Deris, Safaai Alashwal, H. Othman, M. R. QA75 Electronic computers. Computer science Gene Ontology terms have been actively used to annotate various protein sets. SWISS-PROT, TrEMBL, and InterPro are protein databases that are annotated according to the Gene Ontology terms. However, direct implementation of the Gene Ontology terms for annotation of anonymous protein sequences is not easy, especially for species not commonly represented in biological databases. UTMGO is developed as a tool that allows the user to quickly and easily search for a group of semantically related Gene Ontology terms. The applicability of the UTMGO is demonstrated by applying it to annotation of anonymous protein sequence. The extended UTMGO uses the Gene Ontology terms together with protein sequences associated with the terms to perform the annotation task. GOPET, GOtcha, GoFigure, and JAFA are used to compare the performance of the extended UTMGO. World Academy of Science, Engineering and Technology 2006 Article PeerReviewed application/pdf en http://eprints.utm.my/id/eprint/8452/1/8452.pdf Deris, Safaai and Alashwal, H. and Othman, M. R. (2006) UTMGO : a tool for searching a group of semantically related gene ontology terms and application to annotation of anonymous protein sequence. International Journal of Biological and Medical Sciences, 1 (2). pp. 111-119. ISSN 1307-7457 http://www.waset.org/ijbms/v1.html
institution Universiti Teknologi Malaysia
building UTM Library
collection Institutional Repository
continent Asia
country Malaysia
content_provider Universiti Teknologi Malaysia
content_source UTM Institutional Repository
url_provider http://eprints.utm.my/
language English
topic QA75 Electronic computers. Computer science
spellingShingle QA75 Electronic computers. Computer science
Deris, Safaai
Alashwal, H.
Othman, M. R.
UTMGO : a tool for searching a group of semantically related gene ontology terms and application to annotation of anonymous protein sequence
description Gene Ontology terms have been actively used to annotate various protein sets. SWISS-PROT, TrEMBL, and InterPro are protein databases that are annotated according to the Gene Ontology terms. However, direct implementation of the Gene Ontology terms for annotation of anonymous protein sequences is not easy, especially for species not commonly represented in biological databases. UTMGO is developed as a tool that allows the user to quickly and easily search for a group of semantically related Gene Ontology terms. The applicability of the UTMGO is demonstrated by applying it to annotation of anonymous protein sequence. The extended UTMGO uses the Gene Ontology terms together with protein sequences associated with the terms to perform the annotation task. GOPET, GOtcha, GoFigure, and JAFA are used to compare the performance of the extended UTMGO.
format Article
author Deris, Safaai
Alashwal, H.
Othman, M. R.
author_facet Deris, Safaai
Alashwal, H.
Othman, M. R.
author_sort Deris, Safaai
title UTMGO : a tool for searching a group of semantically related gene ontology terms and application to annotation of anonymous protein sequence
title_short UTMGO : a tool for searching a group of semantically related gene ontology terms and application to annotation of anonymous protein sequence
title_full UTMGO : a tool for searching a group of semantically related gene ontology terms and application to annotation of anonymous protein sequence
title_fullStr UTMGO : a tool for searching a group of semantically related gene ontology terms and application to annotation of anonymous protein sequence
title_full_unstemmed UTMGO : a tool for searching a group of semantically related gene ontology terms and application to annotation of anonymous protein sequence
title_sort utmgo : a tool for searching a group of semantically related gene ontology terms and application to annotation of anonymous protein sequence
publisher World Academy of Science, Engineering and Technology
publishDate 2006
url http://eprints.utm.my/id/eprint/8452/1/8452.pdf
http://eprints.utm.my/id/eprint/8452/
http://www.waset.org/ijbms/v1.html
_version_ 1643644994013102080
score 13.211869

Similar Items