Cover Image

Genome sequence data of Burkholderia sp. IMCC1007 isolated from maize rhizosphere: A potential strain in fusaric acid mycotoxin biodegradation

Burkholderia sp. IMCC1007 is a gram-negative, aerobic bacterium affiliated with class Betaproteobacteria, which was successfully isolated from maize rhizospheric soil sample in UTM research plot, Pagoh, Malaysia by using enrichment method. Strain IMCC1007 utilized 50 mgL-1 fusaric acid as its carbon...

Full description

Saved in:
Bibliographic Details
Main Authors: Mohd. Din, Abd. Rahman Jabir, Othman, Nor Zalina
Format: Article
Language:English
Published: Elsevier Inc. 2023
Subjects:
TP Chemical technology
Online Access:http://eprints.utm.my/106497/1/NorZalinaOthman2023_GenomeSequenceDataofBurkholderiaSPIMCC1007.pdf
http://eprints.utm.my/106497/
http://dx.doi.org/10.1016/j.dib.2023.109204
Tags: Add Tag
No Tags, Be the first to tag this record!
id my.utm.106497
record_format eprints
spelling my.utm.1064972024-07-09T06:16:13Z http://eprints.utm.my/106497/ Genome sequence data of Burkholderia sp. IMCC1007 isolated from maize rhizosphere: A potential strain in fusaric acid mycotoxin biodegradation Mohd. Din, Abd. Rahman Jabir Othman, Nor Zalina TP Chemical technology Burkholderia sp. IMCC1007 is a gram-negative, aerobic bacterium affiliated with class Betaproteobacteria, which was successfully isolated from maize rhizospheric soil sample in UTM research plot, Pagoh, Malaysia by using enrichment method. Strain IMCC1007 utilized 50 mgL-1 fusaric acid as its carbon source and degraded it completely within 14 h. Genome sequencing was performed using Illumina NovaSeq platform. The assembled genome was annotated using RAST (Rapid Annotation Subsystem Technology) server. The genome size was approximately 8,568,405 base pairs (bp) in 147 contigs with a G+C content of 66.04%. The genome includes 8,733 coding sequences and 68 RNAs. The genome sequence has been deposited at GenBank with the accession number of JAPVQY000000000. In the pairwise genome-to-genome comparisons, the strain IMCC1007 had an average nucleotide identity (ANI) of 91.9% and digital DNA-DNA hybridization (dDDH) value of 55.2% with Burkholderia anthina DSM 16086T respectively. Interestingly, fusaric acid resistance gene (fusC) and nicABCDFXT gene clusters (hydroxylation of pyridine compound) were found in the genome. Additionally, preliminary genome annotation analysis of strain IMCC1007 identified tryptophan halogenase (prnA) gene responsible for antifungal pyrrolnitrin biosynthesis. This dataset herein provides further insights into the fusaric acid degradation mechanism of the genus Burkholderia. Elsevier Inc. 2023 Article PeerReviewed application/pdf en http://eprints.utm.my/106497/1/NorZalinaOthman2023_GenomeSequenceDataofBurkholderiaSPIMCC1007.pdf Mohd. Din, Abd. Rahman Jabir and Othman, Nor Zalina (2023) Genome sequence data of Burkholderia sp. IMCC1007 isolated from maize rhizosphere: A potential strain in fusaric acid mycotoxin biodegradation. Data in Brief, 48 (NA). pp. 1-8. ISSN 2352-3409 http://dx.doi.org/10.1016/j.dib.2023.109204 DOI : 10.1016/j.dib.2023.109204
institution Universiti Teknologi Malaysia
building UTM Library
collection Institutional Repository
continent Asia
country Malaysia
content_provider Universiti Teknologi Malaysia
content_source UTM Institutional Repository
url_provider http://eprints.utm.my/
language English
topic TP Chemical technology
spellingShingle TP Chemical technology
Mohd. Din, Abd. Rahman Jabir
Othman, Nor Zalina
Genome sequence data of Burkholderia sp. IMCC1007 isolated from maize rhizosphere: A potential strain in fusaric acid mycotoxin biodegradation
description Burkholderia sp. IMCC1007 is a gram-negative, aerobic bacterium affiliated with class Betaproteobacteria, which was successfully isolated from maize rhizospheric soil sample in UTM research plot, Pagoh, Malaysia by using enrichment method. Strain IMCC1007 utilized 50 mgL-1 fusaric acid as its carbon source and degraded it completely within 14 h. Genome sequencing was performed using Illumina NovaSeq platform. The assembled genome was annotated using RAST (Rapid Annotation Subsystem Technology) server. The genome size was approximately 8,568,405 base pairs (bp) in 147 contigs with a G+C content of 66.04%. The genome includes 8,733 coding sequences and 68 RNAs. The genome sequence has been deposited at GenBank with the accession number of JAPVQY000000000. In the pairwise genome-to-genome comparisons, the strain IMCC1007 had an average nucleotide identity (ANI) of 91.9% and digital DNA-DNA hybridization (dDDH) value of 55.2% with Burkholderia anthina DSM 16086T respectively. Interestingly, fusaric acid resistance gene (fusC) and nicABCDFXT gene clusters (hydroxylation of pyridine compound) were found in the genome. Additionally, preliminary genome annotation analysis of strain IMCC1007 identified tryptophan halogenase (prnA) gene responsible for antifungal pyrrolnitrin biosynthesis. This dataset herein provides further insights into the fusaric acid degradation mechanism of the genus Burkholderia.
format Article
author Mohd. Din, Abd. Rahman Jabir
Othman, Nor Zalina
author_facet Mohd. Din, Abd. Rahman Jabir
Othman, Nor Zalina
author_sort Mohd. Din, Abd. Rahman Jabir
title Genome sequence data of Burkholderia sp. IMCC1007 isolated from maize rhizosphere: A potential strain in fusaric acid mycotoxin biodegradation
title_short Genome sequence data of Burkholderia sp. IMCC1007 isolated from maize rhizosphere: A potential strain in fusaric acid mycotoxin biodegradation
title_full Genome sequence data of Burkholderia sp. IMCC1007 isolated from maize rhizosphere: A potential strain in fusaric acid mycotoxin biodegradation
title_fullStr Genome sequence data of Burkholderia sp. IMCC1007 isolated from maize rhizosphere: A potential strain in fusaric acid mycotoxin biodegradation
title_full_unstemmed Genome sequence data of Burkholderia sp. IMCC1007 isolated from maize rhizosphere: A potential strain in fusaric acid mycotoxin biodegradation
title_sort genome sequence data of burkholderia sp. imcc1007 isolated from maize rhizosphere: a potential strain in fusaric acid mycotoxin biodegradation
publisher Elsevier Inc.
publishDate 2023
url http://eprints.utm.my/106497/1/NorZalinaOthman2023_GenomeSequenceDataofBurkholderiaSPIMCC1007.pdf
http://eprints.utm.my/106497/
http://dx.doi.org/10.1016/j.dib.2023.109204
_version_ 1805880819936395264
score 13.211869

Similar Items