Staff View: Characterization of the nearly complete mitochondrial genome of ochraceous darkies, Euphaea ochracea Selys, 1859 (Odonata: Zygoptera: Euphaeidae) and phylogenetic analysis

Characterization of the nearly complete mitochondrial genome of ochraceous darkies, Euphaea ochracea Selys, 1859 (Odonata: Zygoptera: Euphaeidae) and phylogenetic analysis

In the present study, the nearly complete mitochondrial genome of Euphaea ochracea was described and its phylogenetic position in the family Euphaeidae was analyzed. Here, we recovered 13 protein-coding genes, 22 transfer RNAs, 2 ribosomal RNAs and a partial control region, resulting in a mitogenome...

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Main Authors:	Miga, Marylin, Jahari, Puteri Nur Syahzanani, Parimannan, Sivachandran, Rajandas, Heera, Latiff, Muhammad Abu Bakar, Yap, Jing Wei, Shamsir, Mohd. Shahir, Mohd. Salleh, Faezah
Format:	Article
Language:	English
Published:	Taylor and Francis Ltd. 2023
Subjects:	Q Science (General)
Online Access:	http://eprints.utm.my/105851/1/FaezahMohdSalleh2023_CharacterizationoftheNearlyCompleteMitochondrial.pdf http://eprints.utm.my/105851/ http://dx.doi.org/10.1080/23802359.2023.2179355
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spelling	my.utm.1058512024-05-20T07:12:15Z http://eprints.utm.my/105851/ Characterization of the nearly complete mitochondrial genome of ochraceous darkies, Euphaea ochracea Selys, 1859 (Odonata: Zygoptera: Euphaeidae) and phylogenetic analysis Miga, Marylin Jahari, Puteri Nur Syahzanani Parimannan, Sivachandran Rajandas, Heera Latiff, Muhammad Abu Bakar Yap, Jing Wei Shamsir, Mohd. Shahir Mohd. Salleh, Faezah Q Science (General) In the present study, the nearly complete mitochondrial genome of Euphaea ochracea was described and its phylogenetic position in the family Euphaeidae was analyzed. Here, we recovered 13 protein-coding genes, 22 transfer RNAs, 2 ribosomal RNAs and a partial control region, resulting in a mitogenome length of 15,545bp. All protein-coding genes were initiated by the typical ATN codon except nad3 and nad1, which utilizes the TTG codon. Four protein-coding genes (cox1, cox2, cox3 and nad5) are terminated by an incomplete stop codon T, while others end with either a TAA or TAG codon. The intergenic spacer region, S5, is absent in this mitogenome, supporting the lack of this region as a specific character in damselflies. Phylogenetic analysis showed that the newly sequenced E. ochracea is phylogenetically closer to E. ornata with a high support value. Taylor and Francis Ltd. 2023 Article PeerReviewed application/pdf en http://eprints.utm.my/105851/1/FaezahMohdSalleh2023_CharacterizationoftheNearlyCompleteMitochondrial.pdf Miga, Marylin and Jahari, Puteri Nur Syahzanani and Parimannan, Sivachandran and Rajandas, Heera and Latiff, Muhammad Abu Bakar and Yap, Jing Wei and Shamsir, Mohd. Shahir and Mohd. Salleh, Faezah (2023) Characterization of the nearly complete mitochondrial genome of ochraceous darkies, Euphaea ochracea Selys, 1859 (Odonata: Zygoptera: Euphaeidae) and phylogenetic analysis. Mitochondrial DNA Part B: Resources, 8 (2). pp. 292-296. ISSN 2380-2359 (In Press) http://dx.doi.org/10.1080/23802359.2023.2179355 DOI:10.1080/23802359.2023.2179355
institution	Universiti Teknologi Malaysia
building	UTM Library
collection	Institutional Repository
continent	Asia
country	Malaysia
content_provider	Universiti Teknologi Malaysia
content_source	UTM Institutional Repository
url_provider	http://eprints.utm.my/
language	English
topic	Q Science (General)
spellingShingle	Q Science (General) Miga, Marylin Jahari, Puteri Nur Syahzanani Parimannan, Sivachandran Rajandas, Heera Latiff, Muhammad Abu Bakar Yap, Jing Wei Shamsir, Mohd. Shahir Mohd. Salleh, Faezah Characterization of the nearly complete mitochondrial genome of ochraceous darkies, Euphaea ochracea Selys, 1859 (Odonata: Zygoptera: Euphaeidae) and phylogenetic analysis
description	In the present study, the nearly complete mitochondrial genome of Euphaea ochracea was described and its phylogenetic position in the family Euphaeidae was analyzed. Here, we recovered 13 protein-coding genes, 22 transfer RNAs, 2 ribosomal RNAs and a partial control region, resulting in a mitogenome length of 15,545bp. All protein-coding genes were initiated by the typical ATN codon except nad3 and nad1, which utilizes the TTG codon. Four protein-coding genes (cox1, cox2, cox3 and nad5) are terminated by an incomplete stop codon T, while others end with either a TAA or TAG codon. The intergenic spacer region, S5, is absent in this mitogenome, supporting the lack of this region as a specific character in damselflies. Phylogenetic analysis showed that the newly sequenced E. ochracea is phylogenetically closer to E. ornata with a high support value.
format	Article
author	Miga, Marylin Jahari, Puteri Nur Syahzanani Parimannan, Sivachandran Rajandas, Heera Latiff, Muhammad Abu Bakar Yap, Jing Wei Shamsir, Mohd. Shahir Mohd. Salleh, Faezah
author_facet	Miga, Marylin Jahari, Puteri Nur Syahzanani Parimannan, Sivachandran Rajandas, Heera Latiff, Muhammad Abu Bakar Yap, Jing Wei Shamsir, Mohd. Shahir Mohd. Salleh, Faezah
author_sort	Miga, Marylin
title	Characterization of the nearly complete mitochondrial genome of ochraceous darkies, Euphaea ochracea Selys, 1859 (Odonata: Zygoptera: Euphaeidae) and phylogenetic analysis
title_short	Characterization of the nearly complete mitochondrial genome of ochraceous darkies, Euphaea ochracea Selys, 1859 (Odonata: Zygoptera: Euphaeidae) and phylogenetic analysis
title_full	Characterization of the nearly complete mitochondrial genome of ochraceous darkies, Euphaea ochracea Selys, 1859 (Odonata: Zygoptera: Euphaeidae) and phylogenetic analysis
title_fullStr	Characterization of the nearly complete mitochondrial genome of ochraceous darkies, Euphaea ochracea Selys, 1859 (Odonata: Zygoptera: Euphaeidae) and phylogenetic analysis
title_full_unstemmed	Characterization of the nearly complete mitochondrial genome of ochraceous darkies, Euphaea ochracea Selys, 1859 (Odonata: Zygoptera: Euphaeidae) and phylogenetic analysis
title_sort	characterization of the nearly complete mitochondrial genome of ochraceous darkies, euphaea ochracea selys, 1859 (odonata: zygoptera: euphaeidae) and phylogenetic analysis
publisher	Taylor and Francis Ltd.
publishDate	2023
url	http://eprints.utm.my/105851/1/FaezahMohdSalleh2023_CharacterizationoftheNearlyCompleteMitochondrial.pdf http://eprints.utm.my/105851/ http://dx.doi.org/10.1080/23802359.2023.2179355
_version_	1800082672890937344
score	13.211869

Characterization of the nearly complete mitochondrial genome of ochraceous darkies, Euphaea ochracea Selys, 1859 (Odonata: Zygoptera: Euphaeidae) and phylogenetic analysis

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