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Phylogenetic relationship between Barbonymus gonionotus, Barbonymus schwanenfeldii, and Tor tambroides inferred from mitochondrial cytochrome c oxidase I (COI) sequence analysis

The study examined the phylogenetic relationships between the Cyprinids fishes Barbonymus gonionotus, Barbonymus schwanenfeldii and Tor tambroides using DNA sequencing of mitochondrial cytochrome c oxide I (COI) gene fragment using polymerase chain reaction. Sequencing of DNA samples were compared t...

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Main Author: Rozali, Siti Rawaida
Format: Project Paper Report
Language:English
Published: 2013
Online Access:http://psasir.upm.edu.my/id/eprint/82907/1/FP%202013%20116%20-%20IR.pdf
http://psasir.upm.edu.my/id/eprint/82907/
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spelling my.upm.eprints.829072020-07-27T07:36:46Z http://psasir.upm.edu.my/id/eprint/82907/ Phylogenetic relationship between Barbonymus gonionotus, Barbonymus schwanenfeldii, and Tor tambroides inferred from mitochondrial cytochrome c oxidase I (COI) sequence analysis Rozali, Siti Rawaida The study examined the phylogenetic relationships between the Cyprinids fishes Barbonymus gonionotus, Barbonymus schwanenfeldii and Tor tambroides using DNA sequencing of mitochondrial cytochrome c oxide I (COI) gene fragment using polymerase chain reaction. Sequencing of DNA samples were compared to the DNA reference sequence sample in GenBank using the BLAST program. Phylogenetic analysis of eight sequences using maximum likelihood (ML), minimum evolution (ME), and neighbor joining (NJ) resulted in similar tree topologies. The maximum pairwise genetic distance was Barbonymus gonionotus and Tor tambroides (15%), while the minimum value was between Barbonymus gonionotus and Barbonymus schwanenfeldii (11%). Comparative genetics of the genus Tor and Barbonymus not show a significant difference to the value of 16%. 2013 Project Paper Report NonPeerReviewed text en http://psasir.upm.edu.my/id/eprint/82907/1/FP%202013%20116%20-%20IR.pdf Rozali, Siti Rawaida (2013) Phylogenetic relationship between Barbonymus gonionotus, Barbonymus schwanenfeldii, and Tor tambroides inferred from mitochondrial cytochrome c oxidase I (COI) sequence analysis. [Project Paper Report]
institution Universiti Putra Malaysia
building UPM Library
collection Institutional Repository
continent Asia
country Malaysia
content_provider Universiti Putra Malaysia
content_source UPM Institutional Repository
url_provider http://psasir.upm.edu.my/
language English
description The study examined the phylogenetic relationships between the Cyprinids fishes Barbonymus gonionotus, Barbonymus schwanenfeldii and Tor tambroides using DNA sequencing of mitochondrial cytochrome c oxide I (COI) gene fragment using polymerase chain reaction. Sequencing of DNA samples were compared to the DNA reference sequence sample in GenBank using the BLAST program. Phylogenetic analysis of eight sequences using maximum likelihood (ML), minimum evolution (ME), and neighbor joining (NJ) resulted in similar tree topologies. The maximum pairwise genetic distance was Barbonymus gonionotus and Tor tambroides (15%), while the minimum value was between Barbonymus gonionotus and Barbonymus schwanenfeldii (11%). Comparative genetics of the genus Tor and Barbonymus not show a significant difference to the value of 16%.
format Project Paper Report
author Rozali, Siti Rawaida
spellingShingle Rozali, Siti Rawaida
Phylogenetic relationship between Barbonymus gonionotus, Barbonymus schwanenfeldii, and Tor tambroides inferred from mitochondrial cytochrome c oxidase I (COI) sequence analysis
author_facet Rozali, Siti Rawaida
author_sort Rozali, Siti Rawaida
title Phylogenetic relationship between Barbonymus gonionotus, Barbonymus schwanenfeldii, and Tor tambroides inferred from mitochondrial cytochrome c oxidase I (COI) sequence analysis
title_short Phylogenetic relationship between Barbonymus gonionotus, Barbonymus schwanenfeldii, and Tor tambroides inferred from mitochondrial cytochrome c oxidase I (COI) sequence analysis
title_full Phylogenetic relationship between Barbonymus gonionotus, Barbonymus schwanenfeldii, and Tor tambroides inferred from mitochondrial cytochrome c oxidase I (COI) sequence analysis
title_fullStr Phylogenetic relationship between Barbonymus gonionotus, Barbonymus schwanenfeldii, and Tor tambroides inferred from mitochondrial cytochrome c oxidase I (COI) sequence analysis
title_full_unstemmed Phylogenetic relationship between Barbonymus gonionotus, Barbonymus schwanenfeldii, and Tor tambroides inferred from mitochondrial cytochrome c oxidase I (COI) sequence analysis
title_sort phylogenetic relationship between barbonymus gonionotus, barbonymus schwanenfeldii, and tor tambroides inferred from mitochondrial cytochrome c oxidase i (coi) sequence analysis
publishDate 2013
url http://psasir.upm.edu.my/id/eprint/82907/1/FP%202013%20116%20-%20IR.pdf
http://psasir.upm.edu.my/id/eprint/82907/
_version_ 1674067989849178112
score 13.211869

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