Staff View: Data on genome assembly and annotation of Marinobacter sp. strain CA1 isolated from indigenous diatom found in whiteleg shrimp pond in Malaysia

Data on genome assembly and annotation of Marinobacter sp. strain CA1 isolated from indigenous diatom found in whiteleg shrimp pond in Malaysia

Marinobacter is a genus belonging to the class Gammaproteobacteria and the family Alteromonadaceae. This genus is a Gram-negative bacterium which can be found in a wide range of marine and saline water environments. Here, we present the genome sequence of Marinobacter sp. strain CA1 that was isolate...

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Main Authors:	Muthukrishnan, Sarmila, Mohd-Padil, Hirzahida, Mohamed-Alipiah, Norfarrah, Natrah, Ikhsan
Format:	Article
Published:	Elsevier 2022
Online Access:	http://psasir.upm.edu.my/id/eprint/100872/ https://www.sciencedirect.com/science/article/pii/S2352340922002608
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id	my.upm.eprints.100872
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spelling	my.upm.eprints.1008722023-07-26T02:51:19Z http://psasir.upm.edu.my/id/eprint/100872/ Data on genome assembly and annotation of Marinobacter sp. strain CA1 isolated from indigenous diatom found in whiteleg shrimp pond in Malaysia Muthukrishnan, Sarmila Mohd-Padil, Hirzahida Mohamed-Alipiah, Norfarrah Natrah, Ikhsan Marinobacter is a genus belonging to the class Gammaproteobacteria and the family Alteromonadaceae. This genus is a Gram-negative bacterium which can be found in a wide range of marine and saline water environments. Here, we present the genome sequence of Marinobacter sp. strain CA1 that was isolated from the indigenous diatom found in the whiteleg shrimp, Penaeus vannamei (Bonne 1931) pond in Malaysia. Genome sequencing was done using Pacbio and Illumina sequencing platforms. De novo hybrid assembly based on Pacbio long reads and high quality Illumina short reads yielded a complete circular chromosome with 4.7 M base pair (bp) in size. This genome was submitted to Genbank, NCBI database and can be accessed under accession number: NZ_CP071785 and the BioProject acession number PRJNA710741. This data could be useful for other studies on microalgae and bacteria interaction, and comparative genomics analysis of other Marinobacter species. Elsevier 2022-06 Article PeerReviewed Muthukrishnan, Sarmila and Mohd-Padil, Hirzahida and Mohamed-Alipiah, Norfarrah and Natrah, Ikhsan (2022) Data on genome assembly and annotation of Marinobacter sp. strain CA1 isolated from indigenous diatom found in whiteleg shrimp pond in Malaysia. Elsevier, 42. art. no. 108049. pp. 1-5. ISSN 2352-3409 https://www.sciencedirect.com/science/article/pii/S2352340922002608 10.1016/j.dib.2022.108049
institution	Universiti Putra Malaysia
building	UPM Library
collection	Institutional Repository
continent	Asia
country	Malaysia
content_provider	Universiti Putra Malaysia
content_source	UPM Institutional Repository
url_provider	http://psasir.upm.edu.my/
description	Marinobacter is a genus belonging to the class Gammaproteobacteria and the family Alteromonadaceae. This genus is a Gram-negative bacterium which can be found in a wide range of marine and saline water environments. Here, we present the genome sequence of Marinobacter sp. strain CA1 that was isolated from the indigenous diatom found in the whiteleg shrimp, Penaeus vannamei (Bonne 1931) pond in Malaysia. Genome sequencing was done using Pacbio and Illumina sequencing platforms. De novo hybrid assembly based on Pacbio long reads and high quality Illumina short reads yielded a complete circular chromosome with 4.7 M base pair (bp) in size. This genome was submitted to Genbank, NCBI database and can be accessed under accession number: NZ_CP071785 and the BioProject acession number PRJNA710741. This data could be useful for other studies on microalgae and bacteria interaction, and comparative genomics analysis of other Marinobacter species.
format	Article
author	Muthukrishnan, Sarmila Mohd-Padil, Hirzahida Mohamed-Alipiah, Norfarrah Natrah, Ikhsan
spellingShingle	Muthukrishnan, Sarmila Mohd-Padil, Hirzahida Mohamed-Alipiah, Norfarrah Natrah, Ikhsan Data on genome assembly and annotation of Marinobacter sp. strain CA1 isolated from indigenous diatom found in whiteleg shrimp pond in Malaysia
author_facet	Muthukrishnan, Sarmila Mohd-Padil, Hirzahida Mohamed-Alipiah, Norfarrah Natrah, Ikhsan
author_sort	Muthukrishnan, Sarmila
title	Data on genome assembly and annotation of Marinobacter sp. strain CA1 isolated from indigenous diatom found in whiteleg shrimp pond in Malaysia
title_short	Data on genome assembly and annotation of Marinobacter sp. strain CA1 isolated from indigenous diatom found in whiteleg shrimp pond in Malaysia
title_full	Data on genome assembly and annotation of Marinobacter sp. strain CA1 isolated from indigenous diatom found in whiteleg shrimp pond in Malaysia
title_fullStr	Data on genome assembly and annotation of Marinobacter sp. strain CA1 isolated from indigenous diatom found in whiteleg shrimp pond in Malaysia
title_full_unstemmed	Data on genome assembly and annotation of Marinobacter sp. strain CA1 isolated from indigenous diatom found in whiteleg shrimp pond in Malaysia
title_sort	data on genome assembly and annotation of marinobacter sp. strain ca1 isolated from indigenous diatom found in whiteleg shrimp pond in malaysia
publisher	Elsevier
publishDate	2022
url	http://psasir.upm.edu.my/id/eprint/100872/ https://www.sciencedirect.com/science/article/pii/S2352340922002608
_version_	1773545502202134528
score	13.211869

Data on genome assembly and annotation of Marinobacter sp. strain CA1 isolated from indigenous diatom found in whiteleg shrimp pond in Malaysia

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