Staff View: Phylogenetic relationships of waders (Charadriiformes: Scolopacidae) in sarawak inferred from cytochrome oxidase i and recombinant activating gene 1

Phylogenetic relationships of waders (Charadriiformes: Scolopacidae) in sarawak inferred from cytochrome oxidase i and recombinant activating gene 1

Family Scolopacidae includes the sandpipers, shanks, snipes, godwits and curlews. Systematic classifications of shorebirds at the higher level have been successfully resolved. Nevertheless, the phylogeny of shorebirds in the familial level is still poorly understood. Thus, this phylogenetic study on...

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Main Authors:	Nurul Ashikeen, Ab Razak, Mustafa, Abdul Rahman, Andrew Alek, Tuen
Format:	E-Article
Language:	English
Published:	Universiti Kebangsaan Malaysia 2016
Subjects:	SF Animal culture
Online Access:	http://ir.unimas.my/id/eprint/13957/7/Phylogenetic%20Relationships%20of%20Waders%20%28abstract%29.pdf http://ir.unimas.my/id/eprint/13957/ https://www.scopus.com/inward/record.uri?eid=2-s2.0-84983349125&partnerID=40&md5=bc124fede77dbf8500c9bbdeff4d35c0
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id	my.unimas.ir.13957
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spelling	my.unimas.ir.139572017-02-17T01:19:32Z http://ir.unimas.my/id/eprint/13957/ Phylogenetic relationships of waders (Charadriiformes: Scolopacidae) in sarawak inferred from cytochrome oxidase i and recombinant activating gene 1 Nurul Ashikeen, Ab Razak Mustafa, Abdul Rahman Andrew Alek, Tuen SF Animal culture Family Scolopacidae includes the sandpipers, shanks, snipes, godwits and curlews. Systematic classifications of shorebirds at the higher level have been successfully resolved. Nevertheless, the phylogeny of shorebirds in the familial level is still poorly understood. Thus, this phylogenetic study on Scolopacidae was conducted upon the framework provided by the first sequence-based species-level phylogeny within the shorebirds to determine the phylogenetic relationships among family members of Scolopacidae in West Borneo, Sarawak using combined gene markers, mtDNA Cytochrome Oxidise I (COI) and nucDNA Recombinant Activating Gene 1 (RAG1). A total of 1,342 base pair (bp) were inferred from both COI and RAG1 gene from 45 sequences constituted of 15 species Scolopacidae sampled from Sarawak namely Xenus cinereus, Actitis hypoleucos, Tringa totanus, Tringa glareola, Tringa stagnatilis, Heteroscelus brevipes, Calidris alba, Calidris ruficollis, Calidris ferruginea, Calidris tenuirostris, Calidris alpina, Gallinago stenura, Gallinago megala, Numenius arquata, and Numenius phaeopus. The phylogenetic tree was constructed with Charadrius mongulus derived as an outgroup. The Bayesian Inference (BI) tree constructed supported grouping of species into several lineages of Numeniinae, Calidrinae, Scolopacinae and Tringinae. The groupings of species into several lineages correlate with morphological features that contribute to their adaptation and ability of the species to fit to their ecosystems. Universiti Kebangsaan Malaysia 2016-07 E-Article PeerReviewed text en http://ir.unimas.my/id/eprint/13957/7/Phylogenetic%20Relationships%20of%20Waders%20%28abstract%29.pdf Nurul Ashikeen, Ab Razak and Mustafa, Abdul Rahman and Andrew Alek, Tuen (2016) Phylogenetic relationships of waders (Charadriiformes: Scolopacidae) in sarawak inferred from cytochrome oxidase i and recombinant activating gene 1. Sains Malaysiana, 45 (7). pp. 1089-1095. ISSN 0126-6039 https://www.scopus.com/inward/record.uri?eid=2-s2.0-84983349125&partnerID=40&md5=bc124fede77dbf8500c9bbdeff4d35c0
institution	Universiti Malaysia Sarawak
building	Centre for Academic Information Services (CAIS)
collection	Institutional Repository
continent	Asia
country	Malaysia
content_provider	Universiti Malaysia Sarawak
content_source	UNIMAS Institutional Repository
url_provider	http://ir.unimas.my/
language	English
topic	SF Animal culture
spellingShingle	SF Animal culture Nurul Ashikeen, Ab Razak Mustafa, Abdul Rahman Andrew Alek, Tuen Phylogenetic relationships of waders (Charadriiformes: Scolopacidae) in sarawak inferred from cytochrome oxidase i and recombinant activating gene 1
description	Family Scolopacidae includes the sandpipers, shanks, snipes, godwits and curlews. Systematic classifications of shorebirds at the higher level have been successfully resolved. Nevertheless, the phylogeny of shorebirds in the familial level is still poorly understood. Thus, this phylogenetic study on Scolopacidae was conducted upon the framework provided by the first sequence-based species-level phylogeny within the shorebirds to determine the phylogenetic relationships among family members of Scolopacidae in West Borneo, Sarawak using combined gene markers, mtDNA Cytochrome Oxidise I (COI) and nucDNA Recombinant Activating Gene 1 (RAG1). A total of 1,342 base pair (bp) were inferred from both COI and RAG1 gene from 45 sequences constituted of 15 species Scolopacidae sampled from Sarawak namely Xenus cinereus, Actitis hypoleucos, Tringa totanus, Tringa glareola, Tringa stagnatilis, Heteroscelus brevipes, Calidris alba, Calidris ruficollis, Calidris ferruginea, Calidris tenuirostris, Calidris alpina, Gallinago stenura, Gallinago megala, Numenius arquata, and Numenius phaeopus. The phylogenetic tree was constructed with Charadrius mongulus derived as an outgroup. The Bayesian Inference (BI) tree constructed supported grouping of species into several lineages of Numeniinae, Calidrinae, Scolopacinae and Tringinae. The groupings of species into several lineages correlate with morphological features that contribute to their adaptation and ability of the species to fit to their ecosystems.
format	E-Article
author	Nurul Ashikeen, Ab Razak Mustafa, Abdul Rahman Andrew Alek, Tuen
author_facet	Nurul Ashikeen, Ab Razak Mustafa, Abdul Rahman Andrew Alek, Tuen
author_sort	Nurul Ashikeen, Ab Razak
title	Phylogenetic relationships of waders (Charadriiformes: Scolopacidae) in sarawak inferred from cytochrome oxidase i and recombinant activating gene 1
title_short	Phylogenetic relationships of waders (Charadriiformes: Scolopacidae) in sarawak inferred from cytochrome oxidase i and recombinant activating gene 1
title_full	Phylogenetic relationships of waders (Charadriiformes: Scolopacidae) in sarawak inferred from cytochrome oxidase i and recombinant activating gene 1
title_fullStr	Phylogenetic relationships of waders (Charadriiformes: Scolopacidae) in sarawak inferred from cytochrome oxidase i and recombinant activating gene 1
title_full_unstemmed	Phylogenetic relationships of waders (Charadriiformes: Scolopacidae) in sarawak inferred from cytochrome oxidase i and recombinant activating gene 1
title_sort	phylogenetic relationships of waders (charadriiformes: scolopacidae) in sarawak inferred from cytochrome oxidase i and recombinant activating gene 1
publisher	Universiti Kebangsaan Malaysia
publishDate	2016
url	http://ir.unimas.my/id/eprint/13957/7/Phylogenetic%20Relationships%20of%20Waders%20%28abstract%29.pdf http://ir.unimas.my/id/eprint/13957/ https://www.scopus.com/inward/record.uri?eid=2-s2.0-84983349125&partnerID=40&md5=bc124fede77dbf8500c9bbdeff4d35c0
_version_	1644511788985745408
score	13.211869

Phylogenetic relationships of waders (Charadriiformes: Scolopacidae) in sarawak inferred from cytochrome oxidase i and recombinant activating gene 1

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