A Review of Cancer Classification Software for Gene Expression Data

Microarray technology provides a way for researchers to measure the expression level of thousands of genes simultaneously in a single experiment. Due to the increasing amount of microarray data, the field of microarray data analysis has become a major topic among researchers. One of the examples of...

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Main Authors: Tan, Ching Siang, Ting, Wai Soon, Shahreen, Kasim, Mohd Saberi, Mohamad, Chan, Weng Howe, Safaai, Deris, Zalmiyah, Zakaria, Zuraini, Ali Shah, Zuwairie, Ibrahim
Format: Article
Language:English
English
Published: SERSC 2015
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Online Access:http://umpir.ump.edu.my/id/eprint/11602/1/A%20Review%20of%20Cancer%20Classification%20Software%20for%20Gene%20Expression%20Data.pdf
http://umpir.ump.edu.my/id/eprint/11602/7/A%20Review%20of%20Cancer%20Classification%20Software%20for%20Gene%20Expression%20Data.pdf
http://umpir.ump.edu.my/id/eprint/11602/
http://dx.doi.org/10.14257/ijbsbt.2015.7.4.10
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Summary:Microarray technology provides a way for researchers to measure the expression level of thousands of genes simultaneously in a single experiment. Due to the increasing amount of microarray data, the field of microarray data analysis has become a major topic among researchers. One of the examples of microarray data analysis is classification. Classification is the process of determining the classes for samples. The goal of classification is to identify the differentially expressed genes so that these genes can be used to predict the classes for new samples. In order to perform the tasks of classification of microarray data, classification software is required for effective classification and analysis of large-scale data. This paper reviews numerous classification software applications for gene expression data. In this paper, the reviewed software can be categorized into six supervised classification methods: Support Vector Machine, K-Nearest Neighbour, Neural Network, Linear Discriminant Analysis, Bayesian Classifier, and Random Forest.