Staff View: Molecular phylogeny and biogeography of caecilians from Southeast Asia (Amphibia, Gymnophiona, Ichthyophiidae), with special reference to high cryptic species diversity in Sundaland

Molecular phylogeny and biogeography of caecilians from Southeast Asia (Amphibia, Gymnophiona, Ichthyophiidae), with special reference to high cryptic species diversity in Sundaland

We investigated the phylogenetic relationships and estimated the history of species diversification and character evolution in two ichthyophiid genera: Caudacaecilia and Ichthyophis. We estimated the phylogenetic relationships of 67 samples from 33 localities in Southeast Asia from 3840-bp sequences...

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Main Authors:	Nishikawa, K., Matsui, M., Yong, Hoi Sen, Ahmad, N., Yambun, P., Belabut, Daicus Martin, Sudin, A., Hamidy, A., Orlov, N.L., Ota, H., Yoshikawa, N., Tominaga, A., Shimada, T.
Format:	Article
Published:	Elsevier 2012
Subjects:	Q Science (General) QH Natural history
Online Access:	http://eprints.um.edu.my/13279/ http://www.sciencedirect.com/science/article/pii/S105579031200070X http://dx.doi.org/10.1016/j.ympev.2012.02.017
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spelling	my.um.eprints.132792019-12-05T04:31:03Z http://eprints.um.edu.my/13279/ Molecular phylogeny and biogeography of caecilians from Southeast Asia (Amphibia, Gymnophiona, Ichthyophiidae), with special reference to high cryptic species diversity in Sundaland Nishikawa, K. Matsui, M. Yong, Hoi Sen Ahmad, N. Yambun, P. Belabut, Daicus Martin Sudin, A. Hamidy, A. Orlov, N.L. Ota, H. Yoshikawa, N. Tominaga, A. Shimada, T. Q Science (General) QH Natural history We investigated the phylogenetic relationships and estimated the history of species diversification and character evolution in two ichthyophiid genera: Caudacaecilia and Ichthyophis. We estimated the phylogenetic relationships of 67 samples from 33 localities in Southeast Asia from 3840-bp sequences of the mitochondrial 12S rRNA, 16S rRNA, and cyt b genes using Bayesian inference, maximum likelihood, and maximum parsimony methods. The Southeast Asian samples formed a well-supported clade differentiated from a South Asian sample. The Southeast Asian clade was divided into two subclades, one containing samples from South China, Indochina, Malay Peninsula, and Java. The other consisted of samples from Borneo and the Philippines. Neither Caudacaecilia nor Ichthyophis was monophyletic, nor did samples with or without light stripes lateral to the body form clades. We found several distinct sympatric lineages and undescribed species, especially from Sundaland. Elsevier 2012-06 Article PeerReviewed Nishikawa, K. and Matsui, M. and Yong, Hoi Sen and Ahmad, N. and Yambun, P. and Belabut, Daicus Martin and Sudin, A. and Hamidy, A. and Orlov, N.L. and Ota, H. and Yoshikawa, N. and Tominaga, A. and Shimada, T. (2012) Molecular phylogeny and biogeography of caecilians from Southeast Asia (Amphibia, Gymnophiona, Ichthyophiidae), with special reference to high cryptic species diversity in Sundaland. Molecular Phylogenetics and Evolution, 63 (3). pp. 714-723. ISSN 1055-7903 http://www.sciencedirect.com/science/article/pii/S105579031200070X http://dx.doi.org/10.1016/j.ympev.2012.02.017
institution	Universiti Malaya
building	UM Library
collection	Institutional Repository
continent	Asia
country	Malaysia
content_provider	Universiti Malaya
content_source	UM Research Repository
url_provider	http://eprints.um.edu.my/
topic	Q Science (General) QH Natural history
spellingShingle	Q Science (General) QH Natural history Nishikawa, K. Matsui, M. Yong, Hoi Sen Ahmad, N. Yambun, P. Belabut, Daicus Martin Sudin, A. Hamidy, A. Orlov, N.L. Ota, H. Yoshikawa, N. Tominaga, A. Shimada, T. Molecular phylogeny and biogeography of caecilians from Southeast Asia (Amphibia, Gymnophiona, Ichthyophiidae), with special reference to high cryptic species diversity in Sundaland
description	We investigated the phylogenetic relationships and estimated the history of species diversification and character evolution in two ichthyophiid genera: Caudacaecilia and Ichthyophis. We estimated the phylogenetic relationships of 67 samples from 33 localities in Southeast Asia from 3840-bp sequences of the mitochondrial 12S rRNA, 16S rRNA, and cyt b genes using Bayesian inference, maximum likelihood, and maximum parsimony methods. The Southeast Asian samples formed a well-supported clade differentiated from a South Asian sample. The Southeast Asian clade was divided into two subclades, one containing samples from South China, Indochina, Malay Peninsula, and Java. The other consisted of samples from Borneo and the Philippines. Neither Caudacaecilia nor Ichthyophis was monophyletic, nor did samples with or without light stripes lateral to the body form clades. We found several distinct sympatric lineages and undescribed species, especially from Sundaland.
format	Article
author	Nishikawa, K. Matsui, M. Yong, Hoi Sen Ahmad, N. Yambun, P. Belabut, Daicus Martin Sudin, A. Hamidy, A. Orlov, N.L. Ota, H. Yoshikawa, N. Tominaga, A. Shimada, T.
author_facet	Nishikawa, K. Matsui, M. Yong, Hoi Sen Ahmad, N. Yambun, P. Belabut, Daicus Martin Sudin, A. Hamidy, A. Orlov, N.L. Ota, H. Yoshikawa, N. Tominaga, A. Shimada, T.
author_sort	Nishikawa, K.
title	Molecular phylogeny and biogeography of caecilians from Southeast Asia (Amphibia, Gymnophiona, Ichthyophiidae), with special reference to high cryptic species diversity in Sundaland
title_short	Molecular phylogeny and biogeography of caecilians from Southeast Asia (Amphibia, Gymnophiona, Ichthyophiidae), with special reference to high cryptic species diversity in Sundaland
title_full	Molecular phylogeny and biogeography of caecilians from Southeast Asia (Amphibia, Gymnophiona, Ichthyophiidae), with special reference to high cryptic species diversity in Sundaland
title_fullStr	Molecular phylogeny and biogeography of caecilians from Southeast Asia (Amphibia, Gymnophiona, Ichthyophiidae), with special reference to high cryptic species diversity in Sundaland
title_full_unstemmed	Molecular phylogeny and biogeography of caecilians from Southeast Asia (Amphibia, Gymnophiona, Ichthyophiidae), with special reference to high cryptic species diversity in Sundaland
title_sort	molecular phylogeny and biogeography of caecilians from southeast asia (amphibia, gymnophiona, ichthyophiidae), with special reference to high cryptic species diversity in sundaland
publisher	Elsevier
publishDate	2012
url	http://eprints.um.edu.my/13279/ http://www.sciencedirect.com/science/article/pii/S105579031200070X http://dx.doi.org/10.1016/j.ympev.2012.02.017
_version_	1654960652580552704
score	13.211869

Molecular phylogeny and biogeography of caecilians from Southeast Asia (Amphibia, Gymnophiona, Ichthyophiidae), with special reference to high cryptic species diversity in Sundaland

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