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Design and analysis of construction and recombination module using Idury Waterman Algorithm for fragment assembly application / Hafifi Mohd Rafi

There is several algorithms use in sequencing of DNA fragment. This paper presents a study on design and analysis of construction and recombination module using IduryWaterman algorithm and fragment assembly application using Verilog. This algorithm will be implemented on the Xilinx ISE 12.4 software...

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Main Author: Mohd Rafi, Hafifi
Format: Thesis
Language:English
Published: 2012
Online Access:https://ir.uitm.edu.my/id/eprint/103000/1/103000.pdf
https://ir.uitm.edu.my/id/eprint/103000/
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spelling my.uitm.ir.1030002024-09-30T06:43:38Z https://ir.uitm.edu.my/id/eprint/103000/ Design and analysis of construction and recombination module using Idury Waterman Algorithm for fragment assembly application / Hafifi Mohd Rafi Mohd Rafi, Hafifi There is several algorithms use in sequencing of DNA fragment. This paper presents a study on design and analysis of construction and recombination module using IduryWaterman algorithm and fragment assembly application using Verilog. This algorithm will be implemented on the Xilinx ISE 12.4 software to model the sequence and optimize the last sequence of DNA. The DNA sequences will be overlapped in every fragment. Combination of Eulerian path and de Bruijn graph concept will guide the overlaps process between the DNA sequences. Step by step on how the fragment move and overlap to each other. The result of the proposed algorithm, verifies the validity of proposed algorithm. 2012 Thesis NonPeerReviewed text en https://ir.uitm.edu.my/id/eprint/103000/1/103000.pdf Design and analysis of construction and recombination module using Idury Waterman Algorithm for fragment assembly application / Hafifi Mohd Rafi. (2012) Degree thesis, thesis, Universiti Teknologi MARA. <http://terminalib.uitm.edu.my/103000.pdf>
institution Universiti Teknologi Mara
building Tun Abdul Razak Library
collection Institutional Repository
continent Asia
country Malaysia
content_provider Universiti Teknologi Mara
content_source UiTM Institutional Repository
url_provider http://ir.uitm.edu.my/
language English
description There is several algorithms use in sequencing of DNA fragment. This paper presents a study on design and analysis of construction and recombination module using IduryWaterman algorithm and fragment assembly application using Verilog. This algorithm will be implemented on the Xilinx ISE 12.4 software to model the sequence and optimize the last sequence of DNA. The DNA sequences will be overlapped in every fragment. Combination of Eulerian path and de Bruijn graph concept will guide the overlaps process between the DNA sequences. Step by step on how the fragment move and overlap to each other. The result of the proposed algorithm, verifies the validity of proposed algorithm.
format Thesis
author Mohd Rafi, Hafifi
spellingShingle Mohd Rafi, Hafifi
Design and analysis of construction and recombination module using Idury Waterman Algorithm for fragment assembly application / Hafifi Mohd Rafi
author_facet Mohd Rafi, Hafifi
author_sort Mohd Rafi, Hafifi
title Design and analysis of construction and recombination module using Idury Waterman Algorithm for fragment assembly application / Hafifi Mohd Rafi
title_short Design and analysis of construction and recombination module using Idury Waterman Algorithm for fragment assembly application / Hafifi Mohd Rafi
title_full Design and analysis of construction and recombination module using Idury Waterman Algorithm for fragment assembly application / Hafifi Mohd Rafi
title_fullStr Design and analysis of construction and recombination module using Idury Waterman Algorithm for fragment assembly application / Hafifi Mohd Rafi
title_full_unstemmed Design and analysis of construction and recombination module using Idury Waterman Algorithm for fragment assembly application / Hafifi Mohd Rafi
title_sort design and analysis of construction and recombination module using idury waterman algorithm for fragment assembly application / hafifi mohd rafi
publishDate 2012
url https://ir.uitm.edu.my/id/eprint/103000/1/103000.pdf
https://ir.uitm.edu.my/id/eprint/103000/
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score 13.211869

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