Experimental comparison of initial pool generation for direct-proportional length-based DNA computing
Previously, direct-proportional length-based DNA computing (DPLB-DNAC) for solving weighted graph problems such as the shortest path problem, has been proposed. After the initial pool generation, the initial pool is subjected to amplification, by polymerase chain reaction (PCR), and finally, the out...
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2007
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| Online Access: | http://eprints.utm.my/8653/ http://dx.doi.org/10.1109/TENCON.2005.301238 |
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| author | Ibrahim, Zuwairie Muhammad, Mohd. Saufee Tsuboi, Yusei Ono, Osamu Khalid, Marzuki |
| author_facet | Ibrahim, Zuwairie Muhammad, Mohd. Saufee Tsuboi, Yusei Ono, Osamu Khalid, Marzuki |
| author_sort | Ibrahim, Zuwairie |
| building | UTM Library |
| collection | Institutional Repository |
| content_provider | Universiti Teknologi Malaysia |
| content_source | UTM Institutional Repository |
| continent | Asia |
| country | Malaysia |
| description | Previously, direct-proportional length-based DNA computing (DPLB-DNAC) for solving weighted graph problems such as the shortest path problem, has been proposed. After the initial pool generation, the initial pool is subjected to amplification, by polymerase chain reaction (PCR), and finally, the output of the computation can be visualized by gel electrophoresis. In this paper, we give more attention to the initial pool generation of DPLB-DNAC. For this purpose, two kinds of initial pool generation methods, which are hybridization/ligation and parallel overlap assembly (POA) are evaluated. We found that both of the methods can be successfully employed to generate the initial pool generation of DPLB-DNAC, as supported by results of actual experiments. However, POA is more preferable than that of hybridization-ligation in term of population size and generation time. |
| format | Conference or Workshop Item |
| id | my.utm.eprints-8653 |
| institution | Universiti Teknologi Malaysia |
| publishDate | 2007 |
| record_format | eprints |
| spelling | my.utm.eprints-86532017-08-06T01:16:49Z http://eprints.utm.my/8653/ Experimental comparison of initial pool generation for direct-proportional length-based DNA computing Ibrahim, Zuwairie Muhammad, Mohd. Saufee Tsuboi, Yusei Ono, Osamu Khalid, Marzuki TK Electrical engineering. Electronics Nuclear engineering Previously, direct-proportional length-based DNA computing (DPLB-DNAC) for solving weighted graph problems such as the shortest path problem, has been proposed. After the initial pool generation, the initial pool is subjected to amplification, by polymerase chain reaction (PCR), and finally, the output of the computation can be visualized by gel electrophoresis. In this paper, we give more attention to the initial pool generation of DPLB-DNAC. For this purpose, two kinds of initial pool generation methods, which are hybridization/ligation and parallel overlap assembly (POA) are evaluated. We found that both of the methods can be successfully employed to generate the initial pool generation of DPLB-DNAC, as supported by results of actual experiments. However, POA is more preferable than that of hybridization-ligation in term of population size and generation time. 2007 Conference or Workshop Item PeerReviewed Ibrahim, Zuwairie and Muhammad, Mohd. Saufee and Tsuboi, Yusei and Ono, Osamu and Khalid, Marzuki (2007) Experimental comparison of initial pool generation for direct-proportional length-based DNA computing. In: IEEE Region 10 Annual International Conference, Proceeding/TENCON 2007, art. No. 4085068, 21-24 Nov. 2005, Melbourne, Qld.. http://dx.doi.org/10.1109/TENCON.2005.301238 |
| spellingShingle | TK Electrical engineering. Electronics Nuclear engineering Ibrahim, Zuwairie Muhammad, Mohd. Saufee Tsuboi, Yusei Ono, Osamu Khalid, Marzuki Experimental comparison of initial pool generation for direct-proportional length-based DNA computing |
| title | Experimental comparison of initial pool generation for direct-proportional length-based DNA computing |
| title_full | Experimental comparison of initial pool generation for direct-proportional length-based DNA computing |
| title_fullStr | Experimental comparison of initial pool generation for direct-proportional length-based DNA computing |
| title_full_unstemmed | Experimental comparison of initial pool generation for direct-proportional length-based DNA computing |
| title_short | Experimental comparison of initial pool generation for direct-proportional length-based DNA computing |
| title_sort | experimental comparison of initial pool generation for direct-proportional length-based dna computing |
| topic | TK Electrical engineering. Electronics Nuclear engineering |
| url | http://eprints.utm.my/8653/ http://dx.doi.org/10.1109/TENCON.2005.301238 |
| url_provider | http://eprints.utm.my/ |