Parallel Homologous Search With Hirschberg Algorithm: A Hybrid MPI-Pthreads Solution.
In this paper, we apply two different parallel programming model, the message passing model using Message Passing Interface (MPI) and the multithreaded model using Pthreads, to-protein sequence homologous search. The protein sequence homologous search uses Hirschberg algorithm for the pair-wise seq...
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| Format: | Conference or Workshop Item |
| Language: | en |
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2007
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| Online Access: | http://eprints.usm.my/9497/1/Parallel_Homologous_Search_with_Hirschberg_Algorithm_A_Hybird_MPI-Pthreads_Solution.pdf http://eprints.usm.my/9497/ |
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| _version_ | 1834437050669989888 |
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| author | Abdul Rashid, Nur'Aini Abdullah, Rosni Hj. Talib, Abdullah Zawawi |
| author_facet | Abdul Rashid, Nur'Aini Abdullah, Rosni Hj. Talib, Abdullah Zawawi |
| author_sort | Abdul Rashid, Nur'Aini |
| building | Hamzah Sendut Library |
| collection | Institutional Repository |
| content_provider | Universiti Sains Malaysia |
| content_source | USM Institutional Repository |
| continent | Asia |
| country | Malaysia |
| description | In this paper, we apply two different parallel programming model, the message passing model using Message Passing Interface (MPI) and the multithreaded model using Pthreads, to-protein sequence homologous search. The protein sequence homologous search uses Hirschberg algorithm for the pair-wise
sequence alignment.
|
| format | Conference or Workshop Item |
| id | my.usm.eprints.9497 |
| institution | Universiti Sains Malaysia |
| language | en |
| publishDate | 2007 |
| record_format | eprints |
| spelling | my.usm.eprints.9497 http://eprints.usm.my/9497/ Parallel Homologous Search With Hirschberg Algorithm: A Hybrid MPI-Pthreads Solution. Abdul Rashid, Nur'Aini Abdullah, Rosni Hj. Talib, Abdullah Zawawi QA75.5-76.95 Electronic computers. Computer science In this paper, we apply two different parallel programming model, the message passing model using Message Passing Interface (MPI) and the multithreaded model using Pthreads, to-protein sequence homologous search. The protein sequence homologous search uses Hirschberg algorithm for the pair-wise sequence alignment. 2007-07 Conference or Workshop Item PeerReviewed application/pdf en http://eprints.usm.my/9497/1/Parallel_Homologous_Search_with_Hirschberg_Algorithm_A_Hybird_MPI-Pthreads_Solution.pdf Abdul Rashid, Nur'Aini and Abdullah, Rosni and Hj. Talib, Abdullah Zawawi (2007) Parallel Homologous Search With Hirschberg Algorithm: A Hybrid MPI-Pthreads Solution. In: Proceedings Of The 11th WSEAS International Conference On Computers, 26-28 July 2007, Greece . |
| spellingShingle | QA75.5-76.95 Electronic computers. Computer science Abdul Rashid, Nur'Aini Abdullah, Rosni Hj. Talib, Abdullah Zawawi Parallel Homologous Search With Hirschberg Algorithm: A Hybrid MPI-Pthreads Solution. |
| title | Parallel Homologous Search With Hirschberg Algorithm: A Hybrid MPI-Pthreads Solution. |
| title_full | Parallel Homologous Search With Hirschberg Algorithm: A Hybrid MPI-Pthreads Solution. |
| title_fullStr | Parallel Homologous Search With Hirschberg Algorithm: A Hybrid MPI-Pthreads Solution. |
| title_full_unstemmed | Parallel Homologous Search With Hirschberg Algorithm: A Hybrid MPI-Pthreads Solution. |
| title_short | Parallel Homologous Search With Hirschberg Algorithm: A Hybrid MPI-Pthreads Solution. |
| title_sort | parallel homologous search with hirschberg algorithm: a hybrid mpi-pthreads solution. |
| topic | QA75.5-76.95 Electronic computers. Computer science |
| url | http://eprints.usm.my/9497/1/Parallel_Homologous_Search_with_Hirschberg_Algorithm_A_Hybird_MPI-Pthreads_Solution.pdf http://eprints.usm.my/9497/ |
| url_provider | http://eprints.usm.my/ |