Assessing the species composition of tropical eels (Anguillidae) in Aceh Waters, Indonesia, with DNA barcoding gene cox1. [version 1; referees: 1 approved, 2 approved with reservations]
The objective of the present study was to evaluate the species diversity of eels native to Aceh waters based on genetic data. Sampling was conducted in western coast waters of Aceh Province, Indonesia, from July to August 2016. Genomic DNA was extracted from the samples, a genomic region from the...
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| Format: | Article |
| Language: | en |
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F1000Research
2017
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| Online Access: | http://eprints.usm.my/38363/1/Assessing_the_species_composition_of_tropical_eels.pdf http://eprints.usm.my/38363/ https://f1000research.com/articles/6-258/v1 |
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| _version_ | 1834501479937867776 |
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| author | Muchlisin, Zainal A. Batubara, Agung Setia Fadli, Nur Muhammadar, Abdullah A. Utami, Afrita Ida Nurul Farhana, Nurul Farhana Mohd Nor, Siti Azizah |
| author_facet | Muchlisin, Zainal A. Batubara, Agung Setia Fadli, Nur Muhammadar, Abdullah A. Utami, Afrita Ida Nurul Farhana, Nurul Farhana Mohd Nor, Siti Azizah |
| author_sort | Muchlisin, Zainal A. |
| building | Hamzah Sendut Library |
| collection | Institutional Repository |
| content_provider | Universiti Sains Malaysia |
| content_source | USM Institutional Repository |
| continent | Asia |
| country | Malaysia |
| description | The objective of the present study was to evaluate the species diversity of eels
native to Aceh waters based on genetic data. Sampling was conducted in
western coast waters of Aceh Province, Indonesia, from July to August 2016.
Genomic DNA was extracted from the samples, a genomic region from the 5’
region of the cox1 gene was amplified and sequenced, and this was then used
to analyse genetic variation. The genetic sequences were blasted into the NCBI
database. Based on this analysis there were three valid species of eels that
occurred in Aceh waters, namely Anguilla marmorata, A. bicolor bicolor, and A.
bengalensis bengalensis. |
| format | Article |
| id | my.usm.eprints.38363 |
| institution | Universiti Sains Malaysia |
| language | en |
| publishDate | 2017 |
| publisher | F1000Research |
| record_format | eprints |
| spelling | my.usm.eprints.38363 http://eprints.usm.my/38363/ Assessing the species composition of tropical eels (Anguillidae) in Aceh Waters, Indonesia, with DNA barcoding gene cox1. [version 1; referees: 1 approved, 2 approved with reservations] Muchlisin, Zainal A. Batubara, Agung Setia Fadli, Nur Muhammadar, Abdullah A. Utami, Afrita Ida Nurul Farhana, Nurul Farhana Mohd Nor, Siti Azizah QH1 Natural history (General - Including nature conservation, geographical distribution) The objective of the present study was to evaluate the species diversity of eels native to Aceh waters based on genetic data. Sampling was conducted in western coast waters of Aceh Province, Indonesia, from July to August 2016. Genomic DNA was extracted from the samples, a genomic region from the 5’ region of the cox1 gene was amplified and sequenced, and this was then used to analyse genetic variation. The genetic sequences were blasted into the NCBI database. Based on this analysis there were three valid species of eels that occurred in Aceh waters, namely Anguilla marmorata, A. bicolor bicolor, and A. bengalensis bengalensis. F1000Research 2017-10 Article PeerReviewed application/pdf en http://eprints.usm.my/38363/1/Assessing_the_species_composition_of_tropical_eels.pdf Muchlisin, Zainal A. and Batubara, Agung Setia and Fadli, Nur and Muhammadar, Abdullah A. and Utami, Afrita Ida and Nurul Farhana, Nurul Farhana and Mohd Nor, Siti Azizah (2017) Assessing the species composition of tropical eels (Anguillidae) in Aceh Waters, Indonesia, with DNA barcoding gene cox1. [version 1; referees: 1 approved, 2 approved with reservations]. F1000Research, 6 (258). pp. 1-10. ISSN 2046-1402 https://f1000research.com/articles/6-258/v1 |
| spellingShingle | QH1 Natural history (General - Including nature conservation, geographical distribution) Muchlisin, Zainal A. Batubara, Agung Setia Fadli, Nur Muhammadar, Abdullah A. Utami, Afrita Ida Nurul Farhana, Nurul Farhana Mohd Nor, Siti Azizah Assessing the species composition of tropical eels (Anguillidae) in Aceh Waters, Indonesia, with DNA barcoding gene cox1. [version 1; referees: 1 approved, 2 approved with reservations] |
| title | Assessing the species composition of tropical eels (Anguillidae) in Aceh Waters, Indonesia, with DNA barcoding gene cox1. [version 1; referees: 1 approved, 2 approved with reservations] |
| title_full | Assessing the species composition of tropical eels (Anguillidae) in Aceh Waters, Indonesia, with DNA barcoding gene cox1. [version 1; referees: 1 approved, 2 approved with reservations] |
| title_fullStr | Assessing the species composition of tropical eels (Anguillidae) in Aceh Waters, Indonesia, with DNA barcoding gene cox1. [version 1; referees: 1 approved, 2 approved with reservations] |
| title_full_unstemmed | Assessing the species composition of tropical eels (Anguillidae) in Aceh Waters, Indonesia, with DNA barcoding gene cox1. [version 1; referees: 1 approved, 2 approved with reservations] |
| title_short | Assessing the species composition of tropical eels (Anguillidae) in Aceh Waters, Indonesia, with DNA barcoding gene cox1. [version 1; referees: 1 approved, 2 approved with reservations] |
| title_sort | assessing the species composition of tropical eels (anguillidae) in aceh waters, indonesia, with dna barcoding gene cox1. [version 1; referees: 1 approved, 2 approved with reservations] |
| topic | QH1 Natural history (General - Including nature conservation, geographical distribution) |
| url | http://eprints.usm.my/38363/1/Assessing_the_species_composition_of_tropical_eels.pdf http://eprints.usm.my/38363/ https://f1000research.com/articles/6-258/v1 |
| url_provider | http://eprints.usm.my/ |